PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03969.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 316aa    MW: 35558.4 Da    PI: 10.5447
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03969.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.91.2e-20169265295
                              EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                       B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 
                              +kvl++sdv+++gr+vlpkk ae+h  +++ + ++ l +ed  ++r+W++++++  ++ks++y+l+ ++ +Fvk ngL+egDf+v+
  Rsa1.0_03969.1_g00001.1 169 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISLAMEDiGTSRVWNLRYRFwpNNKSRMYLLE-NTGDFVKTNGLQEGDFIVI 253
                              79*************************999999********7778*******99777777777777.******************* PP

                              EE-SS.SEE..EEE CS
                       B3  83 kldgr.sefelvvk 95 
                              +  ++ ++++++++
  Rsa1.0_03969.1_g00001.1 254 Y--SDvKCGKYLIR 265
                              *..55599988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-28163273IPR015300DNA-binding pseudobarrel domain
CDDcd100151.65E-39166267No hitNo description
SuperFamilySSF1019362.16E-22167261IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.659168270IPR003340B3 DNA binding domain
SMARTSM010191.3E-18168270IPR003340B3 DNA binding domain
PfamPF023621.9E-16169264IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MPLQQFTMPN PQYTPFQDPG GGFTGYNMNP YQYPYLPSSG QMRDQGLLRL CSSATKEARK  60
KRMARQRRFL SHHHRHNNNQ QNQTQIGEGC GAVDPQLNHV PTTATGGTWM YWPNVPTMPP  120
TVSSQLPAME TQLPTMDRAG SSSVMPRQQV VPDRRQGWKP EKNLRFLLQK VLKQSDVGNL  180
GRIVLPKKEA ETHLPELEAR DGISLAMEDI GTSRVWNLRY RFWPNNKSRM YLLENTGDFV  240
KTNGLQEGDF IVIYSDVKCG KYLIRGVKVR QPAGQKLEAT SSSAAVTKRQ SKSQRSINNN  300
SPSANIVASP TSQAVK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6727280.0KF672728.1 Brassica napus cultivar Westar abscisic acid insensitive 3 (ABI3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302690.10.0B3 domain-containing transcription factor ABI3-like
SwissprotQ015930.0ABI3_ARATH; B3 domain-containing transcription factor ABI3
TrEMBLV5W6C50.0V5W6C5_BRANA; Abscisic acid insensitive 3
STRINGBra013248.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102802531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-176B3 family protein